Today I’m working on integrate the Percona toolkit (instead of maatkit) in my own tools and I’m playing with pt-query-digest and pt-query-advisor.
These tools can be very interesting to identify some queries from established rules.
The  –review option is available for two of them and helps me to store a sample of each class of query and match them with an advice.

The rules (or advices) are available in the pt-query-advisor documentation and let you identify various problems such as queries with an argument with leading wildcard or with a table joined twice, for example.
There are 3 types of rules : note, warning and  critical.

The goal here is to quickly identify the queries corresponding to a rule, from the slow query log.
So, let me explain what was my method to do that, and, please, give me yours.

First, I need to create a table to store the queries (you can also use –create-review-table option) :

CREATE TABLE query_review (
   checksum     BIGINT UNSIGNED NOT NULL PRIMARY KEY,
   fingerprint  TEXT NOT NULL,
   sample       TEXT NOT NULL,
   first_seen   DATETIME,
   last_seen    DATETIME,
   reviewed_by  VARCHAR(20),
   reviewed_on  DATETIME,
   comments     TEXT
)

It’s interesting to note that the 3 last columns are used to annotate the queries. A simple PHP interface or script can be used to fill these fields (sorry, not enough time to write this script now).

Second easy step, put the queries from the slow query log to the review table with pt-query-digest :
(Note that my review table is in the mysql database and my slow query log is /var/log/slowq.log)

pt-query-digest /var/log/slowq.log --review <DSN OPTIONS>
DSN OPTIONS : u=<user>,p=<pass>,D=mysql,t=query_review,S=/tmp/mysql.sock

And obtain this result in database :
(fingerprint, sample and number of queries truncated for readability)

 
Now, generate an analyze file with pt-query-advisor from the review table :

pt-query-advisor --review <DSN OPTIONS> >/tmp/analyze_queries.log
DSN OPTIONS : u=<user>,p=<pass>,D=mysql,t=query_review,S=/tmp/mysql.sock

In this file, you can find a list of rules with associated queries (but you don’t need to edit the file, go to next step) :

CLA.007 0x4D97479E1774609A 0x6040F6055F330176 0x6BF38A80507513C8 0x7A4ACE71E642E539 0xCE21735A6006AB3D 0xEE13BCBC394FCD83

Finaly, to retrieve all the queries for a particular rule, use the command below (on 1 line) :

cat /tmp/analyze_queries.log | grep <RULE ID>
| awk '{for ( i = 2 ; i <= NF ; i++ ) print $i}'
| xargs -i mysql -u<user> -p<password> -E
-e"SELECT * FROM mysql.query_review WHERE CHECKSUM={}"

Replace the RULE ID, user and password with your informations.
The rules ID can be find in the pt-query-advisor documentation.

Hope that can help.